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1.
Biol Reprod ; 109(6): 799-811, 2023 12 11.
Article En | MEDLINE | ID: mdl-37672213

Galectins are a phylogenetically conserved family of soluble ß-galactoside binding proteins. There are 16 different of galectins, each with a specific function determined by its distinct distribution and spatial structure. Galectin-13, galectin-14, and galectin-16 are distinct from other galectin members in that they are primarily found in placental tissue. These galectins, also referred to as placental galectins, play critical roles in regulating pregnancy-associated processes, such as placenta formation and maternal immune tolerance to the embedded embryo. The unique structural characteristics and the inability to bind lactose of placental galectins have recently received significant attention. This review primarily examines the novel structural features of placental galectins, which distinguish them from the classic galectins. Furthermore, it explores the correlation between these structural features and the loss of ß-galactoside binding ability. In addition, the newly discovered functions of placental galectins in recent years are also summarized in our review. A detailed understanding of the roles of placental galectins may contribute to the discovery of new mechanisms causing numerous pregnancy diseases and enable the development of new diagnostic and therapeutic strategies for the treatment of these diseases, ultimately benefiting the health of mothers and offspring.


Galectins , Placenta , Female , Pregnancy , Humans , Placenta/metabolism , Galectins/chemistry , Galectins/metabolism , Galactosides/chemistry , Galactosides/metabolism
2.
J Org Chem ; 88(13): 9313-9320, 2023 Jul 07.
Article En | MEDLINE | ID: mdl-37269328

Design and synthesis of orthogonally protected monosaccharide building blocks are crucial for the preparation of well-defined oligosaccharides in a stereo- and regiocontrolled manner. Selective introduction of protecting groups to partially protected monosaccharides is nontrivial due to the often unpredictable electronic, steric, and conformational effects of the substituents. Abolished reactivity toward a commonly used Lewis base-catalyzed acylation of O-2 was observed in conformationally restricted 4,6-O-benzylidene-3-O-Nap galactoside. Investigation of analogous systems, crystallographic characterization, and quantum chemical calculations highlighted the overlooked conformational and steric considerations, the combination of which produces a unique passivity of the 2-OH nucleophile. Evaluating the role of electrophile counterion and auxiliary base in the acylation of the sterically crowded and conformationally restricted galactoside system revealed an alternative Brønsted base-driven reaction pathway via nucleophilic activation. Insights gained from this model system were utilized to access the target galactoside intermediate within the envisioned synthetic route. The acylation strategy described herein can be implemented in future syntheses of key monomeric building blocks with unique protecting group hierarchies.


Galactosides , Galactosides/chemistry , Indicators and Reagents , Acylation
3.
Angew Chem Int Ed Engl ; 62(7): e202215535, 2023 02 06.
Article En | MEDLINE | ID: mdl-36398566

Bacterial adhesion, biofilm formation and host cell invasion of the ESKAPE pathogen Pseudomonas aeruginosa require the tetravalent lectins LecA and LecB, which are therefore drug targets to fight these infections. Recently, we have reported highly potent divalent galactosides as specific LecA inhibitors. However, they suffered from very low solubility and an intrinsic chemical instability due to two acylhydrazone motifs, which precluded further biological evaluation. Here, we isosterically substituted the acylhydrazones and systematically varied linker identity and length between the two galactosides necessary for LecA binding. The optimized divalent LecA ligands showed improved stability and were up to 1000-fold more soluble. Importantly, these properties now enabled their biological characterization. The lead compound L2 potently inhibited LecA binding to lung epithelial cells, restored wound closure in a scratch assay and reduced the invasiveness of P. aeruginosa into host cells.


Adhesins, Bacterial , Pseudomonas aeruginosa , Humans , Adhesins, Bacterial/chemistry , Pseudomonas aeruginosa/metabolism , Virulence Factors/metabolism , Galactosides/chemistry , Galactosides/metabolism , Galactosides/pharmacology , Bacterial Adhesion
4.
Eur J Med Chem ; 247: 115025, 2023 Feb 05.
Article En | MEDLINE | ID: mdl-36549118

In this work, ß-thiogalactoside mimetics bearing 1,1-diarylmethylene or benzophenone aglycons have been prepared and assayed for their affinity towards LecA, a lectin and virulence factor from Pseudomonas aeruginosa involved in bacterial adhesion and biofilm formation. The hit compound presents higher efficiency than previously described monovalent inhibitors and the crystal structure confirmed the occurrence of additional contacts between the aglycone and the protein surface. The highest affinity (160 nM) was obtained for a divalent ligand containing two galactosides. The monovalent high affinity compound (Kd = 1 µM) obtained through structure-activity relationship (SAR) showed efficient antibiofilm activity with no associated bactericidal activity.


Adhesins, Bacterial , Pseudomonas aeruginosa , Adhesins, Bacterial/chemistry , Adhesins, Bacterial/metabolism , Pseudomonas aeruginosa/metabolism , Galactosides/chemistry , Structure-Activity Relationship , Biofilms , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/metabolism
5.
Fish Shellfish Immunol ; 131: 1264-1274, 2022 Dec.
Article En | MEDLINE | ID: mdl-36400370

Galectins are an evolutionarily ancient family of lectins characterized by their affinity for ß-galactosides and a conserved binding site in the carbohydrate recognition domain (CRD). These lectins are involved in multiple physiological functions, including the recognition of glycans on the surface of viruses and bacteria. This feature supports their role in innate immune responses in marine mollusks. Here, we identified and characterized a galectin, from the mollusk Haliotis rufescens (named HrGal), with four CRDs that belong to the tandem-repeat type. HrGal was purified by affinity chromatography in a galactose-agarose resin and exhibited a molecular mass of 64.11 kDa determined by MALDI-TOF mass spectrometry. The identity of HrGal was verified by sequencing, confirming that it is a 555 amino acid protein with a mass of 63.86 kDa. This protein corresponds to a galectin reported in GenBank with accession number AHX26603. HrGal is stable in the presence of urea, reducing agents, and ions such as Cu2+ and Zn2+. The recombinant galectin (rHrGal) was purified from inclusion bodies in the presence of these ions. A theoretical model obtained with the AlphaFold server exhibits four non-identical CRDs, with a ß sandwich folding and the representative motifs for binding ß-galactosides. This allows us to classify HrGal within the tandem repeat galectin family. On the basis of a phylogenetic analysis, we found that the mollusk sequences form a monophyletic group of tetradomain galectins unrelated to vertebrate galectins. HrGal showed specificity for galactosides and glucosides but only the sulfated sugars heparin and ι-carrageenan inhibited its hemagglutinating activity with a minimum inhibitory concentration of 4 mM and 6.25 X 10-5% respectively. The position of the sulfate groups seemed crucial for binding, both by carrageenans and heparin.


Galectins , Gastropoda , Animals , Galectins/chemistry , Phylogeny , Sulfates , Galactosides/chemistry , Gastropoda/genetics , Gastropoda/metabolism , Polysaccharides , Mollusca/genetics , Heparin
6.
Food Chem ; 397: 133783, 2022 Dec 15.
Article En | MEDLINE | ID: mdl-35933750

In the presence of vitamin C, cyanidin and cyanidin glycosides are degraded during the processing and storage of food products. To solve this issue, we investigated the protective effects and mechanism of action of five amino acids on the stability of cyanidin and its glycosides from chokeberry. The results showed that 0.3% tryptophan most effectively inhibited the degradation of cyanidin and its glycosides in the presence of vitamin C, under ultraviolet, dark, and sucrose-rich conditions. Fluorescence spectrum analysis showed that tryptophan could form noncovalent binding complexes with cyanidin-3-O-galactoside and cyanidin through hydrophobic and electrostatic forces and hydrogen bonds. Molecular docking results showed that the indole structure of tryptophan could form hydrophobic interactions with cyanidin-3-O-galactoside and cyanidin via hydrogen bonding, resulting in greater protection. Therefore, tryptophan could effectively protect cyanidin and its glycosides in cyanidin- and cyanidin glycoside-rich food products.


Ascorbic Acid , Glycosides , Amino Acids , Anthocyanins/chemistry , Galactosides/chemistry , Glycosides/chemistry , Molecular Docking Simulation , Protective Agents , Tryptophan/chemistry , Vitamins/chemistry
7.
Mikrochim Acta ; 189(1): 4, 2021 12 02.
Article En | MEDLINE | ID: mdl-34855041

Synthetic biology approaches for rewiring of bacterial constructs to express particular intracellular factors upon induction with the target analyte are emerging as sensing paradigms for applications in environmental and in vivo monitoring. To aid in the design and optimization of bacterial constructs for sensing analytes, there is a need for lysis-free intracellular detection modalities that monitor the signal level and kinetics of expressed factors within different modified bacteria in a multiplexed manner, without requiring cumbersome surface immobilization. Herein, an electrochemical detection system on nanoporous gold that is electrofabricated with a biomaterial redox capacitor is presented for quantifying ß-galactosidase expressed inside modified Escherichia coli constructs upon induction with dopamine. This nanostructure-mediated redox amplification approach on a microfluidic platform allows for multiplexed assessment of the expressed intracellular factors from different bacterial constructs suspended in distinct microchannels, with no need for cell lysis or immobilization. Since redox mediators present over the entire depth of the microchannel can interact with the electrode and with the E. coli construct in each channel, the platform exhibits high sensitivity and enables multiplexing. We envision its application in assessing synthetic biology-based approaches for comparing specificity, sensitivity, and signal response time upon induction with target analytes of interest.


Catechols/chemistry , Chitosan/chemistry , Electrochemical Techniques/methods , Escherichia coli Proteins/analysis , Nanopores , beta-Galactosidase/analysis , Dopamine/pharmacology , Escherichia coli/enzymology , Escherichia coli Proteins/metabolism , Galactosides/chemistry , Galactosides/metabolism , Gold/chemistry , Limit of Detection , Microfluidic Analytical Techniques , Oxidation-Reduction , Ruthenium/chemistry , Trans-Activators/metabolism , beta-Galactosidase/metabolism
8.
Carbohydr Res ; 510: 108457, 2021 Dec.
Article En | MEDLINE | ID: mdl-34638084

Single crystal X-ray and NMR investigations on multidomain structured N-(4,6-di-O-acetyl-2,3-dideoxy-α-D-threo-hex-2-en-2-iodo-pyranosyl)-methylsulfonamide are reported. This is the first crystallographic diffraction data report related to a 2-halo-2,3-unsaturated galactoside derivative. A complete structural study, including conformations and crystal packing, was performed by analyzing the spectroscopic data in solid state (XRD) and in solution (NMR).


Galactosides/chemistry , Carbohydrate Conformation , Crystallography, X-Ray , Magnetic Resonance Spectroscopy , Models, Molecular
9.
J Oleo Sci ; 70(9): 1253-1259, 2021.
Article En | MEDLINE | ID: mdl-34483219

Compression-induced formation of condensed-phase domains in adsorbed monolayers of alkylgalactosides (AGs) at the air/water interface was observed. When an aqueous solution of AGs was poured into a Langmuir trough, the AG molecules were spontaneously adsorbed from the solution at the air/water interface to form the adsorbed or Gibbs monolayer in an expanded, liquid-like phase at equilibrium. The monolayer was subsequently laterally compressed by the barriers of the trough, while simultaneously observing the system using a Brewster angle microscope (BAM). The surface pressure-film area isotherm upon compression showed a kink at a surface pressure (πkink) comparable to or several mN・m-1 higher than the surface pressure at the critical micelle concentration (πCMC), followed by a plateau region. BAM observations revealed that condensed-phase domains were formed in the homogeneous expanded phase at the plateau. Hence, the plateau corresponds to a first-order phase transition from the expanded phase to the condensed phase. As expected, the compressed adsorbed monolayer was in a metastable state because the surface pressure decreased with time, and the condensed-phase domains disappeared when compression was discontinued. The transient formation of a quasi-stable condensed phase may originate from the combined effect of the lower solubility of AG molecules in water, moderately strong attractive intermolecular interactions between AG molecules at the air/water interface, and high-rate compression.


Air , Galactosides/chemistry , Phase Transition , Pressure , Stress, Mechanical , Surface Properties , Water/chemistry , Adsorption , Membranes, Artificial , Surface-Active Agents
10.
Glycobiology ; 31(11): 1490-1499, 2021 12 18.
Article En | MEDLINE | ID: mdl-34255029

Pseudomonas aeruginosa is a widespread opportunistic pathogen that is capable of colonizing various human tissues and is resistant to many antibiotics. LecA is a galactose binding tetrameric lectin involved in adhesion, infection and biofilm formation. This study reports on the binding characteristics of mono- and divalent (chelating) ligands to LecA using different techniques. These techniques include affinity capillary electrophoresis, bio-layer interferometry, native mass spectrometry and a thermal shift assay. Aspects of focus include: affinity, selectivity, binding kinetics and residence time. The affinity of a divalent ligand was determined to be in the low-nanomolar range for all of the used techniques and with a ligand residence time of approximately 7 h, while no strong binding was seen to related lectin tetramers. Each of the used techniques provides a unique and complementary insight into the chelation based binding mode of the divalent ligand to the LecA tetramer.


Galactosides/chemistry , Lectins/chemistry , Pseudomonas aeruginosa/chemistry , Temperature , Binding Sites , Electrophoresis, Capillary , Interferometry , Ligands , Mass Spectrometry
11.
Virology ; 562: 29-39, 2021 10.
Article En | MEDLINE | ID: mdl-34246113

When human influenza viruses are isolated and passaged in chicken embryos, variants with amino acid substitutions around the receptor binding site of hemagglutinin (HA) are selected; however, the mechanisms that underlie this phenomenon have yet to be elucidated. Here, we analyzed the receptor structures that contributed to propagation of egg-passaged human H1N1 viruses. The analysis included seasonal and 2009 pandemic strains, both of which have amino acid substitutions of HA found in strains isolated or passaged in eggs. These viruses exhibited high binding to sulfated glycans containing NeuAcα2-3Gal. In MDCK cells overexpressing the sulfotransferase that synthesize Galß1-4(SO3--6)GlcNAc, production of human H1N1 viruses was increased up to 90-fold. Furthermore, these sulfated glycans were expressed on the allantoic and amniotic membranes of chicken embryos. These results suggest that 6-sulfo sialyl Lewis X and/or NeuAcα2-3Galß1-4(SO3--6)GlcNAc are involved in efficient propagation of human H1N1 viruses in chicken embryos.


Chick Embryo/virology , Influenza A Virus, H1N1 Subtype/growth & development , Polysaccharides/metabolism , Sulfates/metabolism , Allantois/metabolism , Amnion/metabolism , Animals , Chick Embryo/metabolism , Dogs , Galactosides/chemistry , Galactosides/metabolism , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/metabolism , Madin Darby Canine Kidney Cells , Mutation , N-Acetylneuraminic Acid/chemistry , N-Acetylneuraminic Acid/metabolism , Polysaccharides/chemistry , Receptors, Virus/metabolism , Sulfates/chemistry , Sulfotransferases/genetics , Sulfotransferases/metabolism , Carbohydrate Sulfotransferases
12.
Eur J Med Chem ; 223: 113664, 2021 Nov 05.
Article En | MEDLINE | ID: mdl-34225180

We have obtained the X-ray crystal structure of the galectin-8 N-terminal domain (galectin-8N) with a previously reported quinoline-galactoside ligand at a resolution of 1.6 Å. Based on this X-ray structure, a collection of galactosides derivatised at O3 with triazole, benzimidazole, benzothiazole, and benzoxazole moieties were designed and synthesised. This led to the discovery of a 3-O-(N-methylbenzimidazolylmethyl)-galactoside with a Kd of 1.8 µM for galectin-8N, the most potent selective synthetic galectin-8N ligand to date. Molecular dynamics simulations showed that benzimidazole-galactoside derivatives bind the non-conserved amino acid Gln47, accounting for the higher selectivity for galectin-8N. Galectin-8 is a carbohydrate-binding protein that plays a key role in pathological lymphangiogenesis, modulation of the immune system, and autophagy. Thus, the benzimidazole-derivatised galactosides represent promising compounds for studies of the pathological implications of galectin-8, as well as a starting point for the development of anti-tumour and anti-inflammatory therapeutics targeting galectin-8.


Benzimidazoles/chemistry , Drug Design , Galactosides/chemistry , Galectins/chemistry , Benzimidazoles/metabolism , Binding Sites , Crystallography, X-Ray , Galactosides/metabolism , Galectins/genetics , Galectins/metabolism , Humans , Kinetics , Ligands , Molecular Dynamics Simulation , Protein Binding , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Structure-Activity Relationship , Thermodynamics
13.
Bioorg Med Chem ; 44: 116309, 2021 08 15.
Article En | MEDLINE | ID: mdl-34293617

Galectins, soluble lectins widely expressed intra- and extracellularly in different cell types, play major roles in deciphering the cellular glycocode. Galectin-1 (Gal-1), a prototype member of this family, presents a carbohydrate recognition domain (CRD) with specific affinity for ß-galactosides such as N-acetyllactosamine (ß-d-Galp-(1 â†’ 4)-d-GlcpNAc), and mediate numerous physiological and pathological processes. In this work, Gal-1 binding affinity for ß-(1 â†’ 6) galactosides, including ß-d-Galp-(1 â†’ 6)-ß-d-GlcpNAc-(1 â†’ 4)-d-GlcpNAc was evaluated, and their performance was compared to that of ß-(1 â†’ 4) and ß-(1 â†’ 3) galactosides. To this end, the trisaccharide ß-d-Galp-(1 â†’ 6)-ß-d-GlcpNAc-(1 â†’ 4)-d-GlcpNAc was enzymatically synthesized, purified and structurally characterized. To evaluate the affinity of Gal-1 for the galactosides, competitive solid phase assays (SPA) and isothermal titration calorimetry (ITC) studies were carried out. The experimental dissociation constants and binding energies obtained were compared to those calculated by molecular docking. These analyses evidenced the critical role of the glycosidic linkage between the terminal galactopyranoside residue and the adjacent monosaccharide, as galactosides bearing ß-(1 â†’ 6) glycosidic linkages showed dissociation constants six- and seven-fold higher than those involving ß-(1 â†’ 4) and ß-(1 â†’ 3) linkages, respectively. Moreover, docking experiments revealed the presence of hydrogen bond interactions between the N-acetyl group of the glucosaminopyranose moiety of the evaluated galactosides and specific amino acid residues of Gal-1, relevant for galectin-glycan affinity. Noticeably, the binding free energies (ΔGbindcalc) derived from the molecular docking were in good agreement with experimental values determined by ITC measurements (ΔGbindexp), evidencing a good correlation between theoretical and experimental approaches, which validates the in silico simulations and constitutes an important tool for the rational design of future optimized ligands.


Galactosides/chemistry , Galectin 1/chemistry , Sugars/chemistry , Acetylation , Carbohydrate Conformation , Humans , Molecular Docking Simulation
14.
Int J Mol Sci ; 22(9)2021 Apr 26.
Article En | MEDLINE | ID: mdl-33925857

Building-up and breaking-down of carbohydrates are processes common to all forms of life. Glycoside hydrolases are a broad class of enzymes that play a central role in the cleavage of glycosidic bonds, which is fundamental to carbohydrate degradation. The large majority of substrates are five- and six-membered ring glycosides. Our interest in seven-membered ring septanose sugars has inspired the development of a way to search for septanoside hydrolase activity. Described here is a strategy for the discovery of septanoside hydrolases that uses synthetic indolyl septanosides as chromogenic substrates. Access to these tool compounds was enabled by a route where septanosyl halides act as glycosyl donors for the synthesis of the indolyl septanosides. The screening strategy leverages the known dimerization of 3-hydroxy-indoles to make colored dyes, as occurs when the ß-galactosidase substrate X-Gal is hydrolyzed. Because screens in bacterial cells would enable searches in organisms that utilize heptoses or from metagenomics libraries, we also demonstrate that septanosides are capable of entering E. coli cells through the use of a BODIPY-labeled septanoside. The modularity of the indolyl septanoside synthesis should allow the screening of a variety of substrates that mimic natural structures via this general approach.


Escherichia coli/metabolism , Glycosides/biosynthesis , Hydrolases/metabolism , Carbohydrate Metabolism , Chromogenic Compounds/chemistry , Escherichia coli/chemistry , Galactosides/biosynthesis , Galactosides/chemistry , Glycoside Hydrolases/metabolism , Glycosides/chemistry , Hydrolysis , Indoles/chemistry
15.
Mediators Inflamm ; 2021: 7372893, 2021.
Article En | MEDLINE | ID: mdl-33551679

BACKGROUND: Our previous research showed the antioxidant activity of anthocyanins extracted from Aronia melanocarpa of black chokeberry in vitro. Ischemia acute kidney injury is a significant risk in developing progressive and deterioration of renal function leading to clinic chronic kidney disease. There were many attempts to protect the kidney against this progression of renal damage. Current study was designed to examine the effect of pretreatment with three anthocyanins named cyanidin-3-arabinoside, cyanidin-3-glucodise, and cyaniding-3-galactoside against acute ischemia-reperfusion injury in mouse kidney. METHODS: Acute renal injury model was initiated by 30 min clamping bilateral renal pedicle and followed by 24-hour reperfusion in C57Bl/6J mice. Four groups of mice were orally pretreated in 50 mg/g/12 h for two weeks with cyanidin-3-arabinoside, cyanidin-3-glucodise, and cyaniding-3-galactoside and anthocyanins (three-cyanidin mixture), respectively, sham-control group and the renal injury-untreated groups only with saline. RESULTS: The model resulted in renal dysfunction with high serum creatinine, blood urea nitrogen, and changes in proinflammatory cytokines (TNF-ɑ, IL-1ß, IL-6, and MCP-1), renal oxidative stress (SOD, GSH, and CAT), lipid peroxidation (TBARS and MDA), and apoptosis (caspase-9). Pretreatment of two weeks resulted in different extent amelioration of renal dysfunction and tubular damage and suppression of proinflammatory cytokines, oxidative stress, lipid peroxidation, and apoptosis, thus suggesting that cyanidins are potentially effective in acute renal ischemia by the decrease of inflammation, oxidative stress, and lipid peroxidation, as well as apoptosis. CONCLUSION: the current study provided the first attempt to investigate the role of anthocyanins purified from Aronia melanocarpa berry in amelioration of acute renal failure via antioxidant and cytoprotective effects.


Anthocyanins/metabolism , Kidney Failure, Chronic/metabolism , Kidney/drug effects , Photinia/metabolism , Reperfusion Injury , Animals , Anthocyanins/chemistry , Antioxidants/chemistry , Apoptosis , Arabinonucleosides/chemistry , Body Weight , Caspase 9/metabolism , Fruit , Galactosides/chemistry , Inflammation , Kidney/metabolism , Lipid Peroxidation , Mice , Mice, Inbred C57BL , Oxidative Stress/drug effects , Reperfusion , Risk
16.
Anal Bioanal Chem ; 413(9): 2361-2388, 2021 Apr.
Article En | MEDLINE | ID: mdl-33606064

ß-Galactosidase (ß-Gal) is a widely used enzyme as a reporter gene in the field of molecular biology which hydrolyzes the ß-galactosides into monosaccharides. ß-Gal is an essential enzyme in humans and its deficiency or its overexpression results in several rare diseases. Cellular senescence is probably one of the most relevant physiological disorders that involve ß-Gal enzyme. In this review, we assess the progress made to date in the design of molecular-based probes for the detection of ß-Gal both in vitro and in vivo. Most of the reported molecular probes for the detection of ß-Gal consist of a galactopyranoside residue attached to a signalling unit through glycosidic bonds. The ß-Gal-induced hydrolysis of the glycosidic bonds released the signalling unit with remarkable changes in color and/or emission. Additional examples based on other approaches are also described. The wide applicability of these probes for the rapid and in situ detection of de-regulation ß-Gal-related diseases has boosted the research in this fertile field.


Fluorescent Dyes/chemistry , Galactose/analogs & derivatives , beta-Galactosidase/analysis , Animals , Cellular Senescence , Colorimetry/methods , Enzyme Assays/methods , Galactosides/chemistry , Humans , Hydrolysis , Molecular Probes/chemistry
17.
Article En | MEDLINE | ID: mdl-33486218

The screening and identification of bioactive components, which are effectively resistant to metallo-beta-lactamase (MßL), were studied in the alcohol extract of Schisandra chinensis (Turcz.) Baill. by metalloenzyme-immobilized affinity chromatography. Taking bizinc metalloenzyme beta-lactamase II from Bacillus cereus (Bc II) and monozinc metalloenzyme CphA from aeromonas hydrophila (CphA) as examples, we studied the feasibility of this scheme based on the construction of metalloenzyme-immobilized chromatographic model. It was found that the Bc II- and CphA-immobilized chromatographic column could be used not only to explore the interaction between the MßL and their specific ligands, but also to screen the bioactive components from traditional Chinese medicine. The Bc II-and CphA-immobilized columns were used to screen the bioactive components from the alcohol extract of Schisandra chinensis (Turcz.) Baill. Time-of-flight tandem mass spectrometry analysis and molecular docking revealed that isobutyl 3-O-sulfo-ß-D-galactopyranoside is the effective bioactive components that could bind with metalloenzyme Bc II. It is believed that our current work may provide a methodological reference for screening MßL inhibitors from traditional Chinese medicine.


Bacterial Proteins/metabolism , Cephalosporinase/metabolism , Drug Discovery/methods , Plant Extracts/analysis , Schisandra/chemistry , beta-Lactamases/metabolism , Bacterial Proteins/chemistry , Cephalosporinase/chemistry , Chromatography, Affinity , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Galactosides/analysis , Galactosides/chemistry , Galactosides/metabolism , Molecular Docking Simulation , Plant Extracts/chemistry , Plant Extracts/metabolism , beta-Lactamases/chemistry
18.
Acta Crystallogr D Struct Biol ; 76(Pt 11): 1080-1091, 2020 Nov 01.
Article En | MEDLINE | ID: mdl-33135679

Carbohydrate-lectin interactions are involved in important cellular recognition processes, including viral and bacterial infections, inflammation and tumor metastasis. Hence, structural studies of lectin-synthetic glycan complexes are essential for understanding lectin-recognition processes and for the further design of promising chemotherapeutics that interfere with sugar-lectin interactions. Plant lectins are excellent models for the study of the molecular-recognition process. Among them, peanut lectin (PNA) is highly relevant in the field of glycobiology because of its specificity for ß-galactosides, showing high affinity towards the Thomsen-Friedenreich antigen, a well known tumor-associated carbohydrate antigen. Given this specificity, PNA is one of the most frequently used molecular probes for the recognition of tumor cell-surface O-glycans. Thus, it has been extensively used in glycobiology for inhibition studies with a variety of ß-galactoside and ß-lactoside ligands. Here, crystal structures of PNA are reported in complex with six novel synthetic hydrolytically stable ß-N- and ß-S-galactosides. These complexes disclosed key molecular-binding interactions of the different sugars with PNA at the atomic level, revealing the roles of specific water molecules in protein-ligand recognition. Furthermore, binding-affinity studies by isothermal titration calorimetry showed dissociation-constant values in the micromolar range, as well as a positive multivalency effect in terms of affinity in the case of the divalent compounds. Taken together, this work provides a qualitative structural rationale for the upcoming synthesis of optimized glycoclusters designed for the study of lectin-mediated biological processes. The understanding of the recognition of ß-N- and ß-S-galactosides by PNA represents a benchmark in protein-carbohydrate interactions since they are novel synthetic ligands that do not belong to the family of O-linked glycosides.


Galactosides , Models, Molecular , Peanut Agglutinin , Galactosides/chemistry , Ligands , Peanut Agglutinin/chemistry , Protein Binding
19.
J Biol Chem ; 295(52): 18426-18435, 2020 12 25.
Article En | MEDLINE | ID: mdl-33127644

α-Linked galactose is a common carbohydrate motif in nature that is processed by a variety of glycoside hydrolases from different families. Terminal Galα1-3Gal motifs are found as a defining feature of different blood group and tissue antigens, as well as the building block of the marine algal galactan λ-carrageenan. The blood group B antigen and linear α-Gal epitope can be processed by glycoside hydrolases in family GH110, whereas the presence of genes encoding GH110 enzymes in polysaccharide utilization loci from marine bacteria suggests a role in processing λ-carrageenan. However, the structure-function relationships underpinning the α-1,3-galactosidase activity within family GH110 remain unknown. Here we focus on a GH110 enzyme (PdGH110B) from the carrageenolytic marine bacterium Pseudoalteromonas distincta U2A. We showed that the enzyme was active on Galα1-3Gal but not the blood group B antigen. X-ray crystal structures in complex with galactose and unhydrolyzed Galα1-3Gal revealed the parallel ß-helix fold of the enzyme and the structural basis of its inverting catalytic mechanism. Moreover, an examination of the active site reveals likely adaptations that allow accommodation of fucose in blood group B active GH110 enzymes or, in the case of PdGH110, accommodation of the sulfate groups found on λ-carrageenan. Overall, this work provides insight into the first member of a predominantly marine clade of GH110 enzymes while also illuminating the structural basis of α-1,3-galactoside processing by the family as a whole.


Blood Group Antigens/metabolism , Carrageenan/metabolism , Galactosides/metabolism , Glycoside Hydrolases/chemistry , Pseudoalteromonas/enzymology , Blood Group Antigens/chemistry , Carrageenan/chemistry , Catalytic Domain , Crystallography, X-Ray , Galactosides/chemistry , Glycoside Hydrolases/classification , Glycoside Hydrolases/metabolism , Hydrolysis , Models, Molecular , Phylogeny , Protein Conformation , Substrate Specificity
20.
Food Funct ; 11(10): 8527-8536, 2020 Oct 21.
Article En | MEDLINE | ID: mdl-33000849

Obesity is a chronic disease that has been causing serious problems all over the world. However, there is a lack of available therapeutic approaches to treat obesity. The FDA-approved drug orlistat has severe side effects, such as abdominal pain, flatulence and oily stool. As the therapeutic target of orlistat is pancreatic lipase, there is an urgent need for discovery of new pancreatic lipase inhibitors from natural sources that have reduced side effects compared with orlistat. In this study, ultrafiltration in combination with molecular simulation and spectroscopy was reported as an effective approach for identifying new pancreatic lipase inhibitors from anthocyanin-rich berry sources. Using this approach, four monomeric anthocyanins cyanidin-3-O-arabinoside (C3A), cyanidin-3-O-galactoside (C3Ga), peonidin-3-O-arabinoside (Pn3A) and peonidin-3-O-galactoside (Pn3Ga) from cranberries were discovered as potent pancreatic lipase inhibitors. These four cranberry anthocyanins were shown to form hydrophobic interactions and hydrogen bonds with pocket amino acid residues in molecular docking and molecular dynamics simulations. C3A showed greater impact on secondary structures of the enzyme and showed higher binding capacity with the enzyme compared with C3Ga, Pn3A and Pn3Ga as observed by CD and fluorescence spectroscopy. The structure-activity relationships were then investigated and summarized as both the structures of the B ring and glycosyl group were related to the inhibitory activities of anthocyanins. In short, our results suggested that cranberry anthocyanins could be developed as food supplements to facilitate the prevention and treatment of obesity.


Anthocyanins/pharmacology , Enzyme Inhibitors/pharmacology , Lipase/antagonists & inhibitors , Pancreas/enzymology , Plant Extracts/chemistry , Vaccinium macrocarpon/chemistry , Animals , Anthocyanins/chemistry , Anthocyanins/isolation & purification , Circular Dichroism , Dietary Supplements , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/isolation & purification , Fruit/chemistry , Galactosides/chemistry , Galactosides/isolation & purification , Galactosides/pharmacology , Lipase/chemistry , Lipase/metabolism , Models, Molecular , Molecular Docking Simulation , Molecular Dynamics Simulation , Structure-Activity Relationship , Swine , Ultrafiltration
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